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Crystal structure of D110G mutant of gatase subunit of methanocaldococcus jannaschii gmp synthetase

Analyse Crystal structure of D110G mutant of gatase subunit of methanocaldococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7D96
Type: protein
Length: 185 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gmp synthase [glutamine-hydrolyzing] subunit a
EC: 6.3.5.2
UniProt: Q58970
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gmp synthase [glutamine-hydrolyzing] subunit a (EC 6.3.5.2)	protein	185	25% helix, 37% strand	Q58970

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.39	0.81	21	empty

Compared structures

7D96 · Crystal structure of D110G mutant of GATase subunit of Methanocaldococcus jannaschii GMP… · the same entry in another collection · chain A against A, TM-score 1.00
Q58970 · AlphaFold monomer V2.0 prediction for gmp synthase [glutamine- hydrolyzing] subunit a… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58970
Elsewhere: RCSB PDB 7D96 · PDBe 7D96 · UniProt Q58970

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