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Crystal structure of bacillus subtilis levansucrase

Analyse Crystal structure of bacillus subtilis levansucrase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OYG
Type: protein
Length: 440 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levansucrase
EC: 2.4.1.10
UniProt: P05655
Ligands: CA
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Levansucrase (EC 2.4.1.10)	protein	440	17% helix, 41% strand	P05655

Ligands and binding sites

CA · Calcium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	245	0.55	0.78	28	EDO

Compared structures

1OYG · Crystal structure of Bacillus subtilis levansucrase · the same entry in another collection · chain A against A, TM-score 1.00
P05655 · AlphaFold monomer V2.0 prediction for levansucrase (P05655) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05655
Elsewhere: RCSB PDB 1OYG · PDBe 1OYG · UniProt P05655

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