Research workbench
Left-handed G-quadruplex containing two bulges
Analyse Left-handed G-quadruplex containing two bulges in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7D5E
- Type
- DNA
- Length
- 56 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2XBULGE-LHG4MOTIF
- Ligands
- SPM, K, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 2XBULGE-LHG4MOTIF | dna | 28 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · 4 copies · chains A, B
- K · Potassium ion · metal · 7 copies · chains A, B
- NA · Sodium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 34 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 7D5E · Left-handed G-quadruplex containing two bulges · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7D5E · PDBe 7D5E
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.