Research workbench

Structure of chloride ion pumping rhodopsin (clr) with ntq motif 50 ps after light activation

Analyse Structure of chloride ion pumping rhodopsin (clr) with ntq motif 50 ps after… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CRL
Type: protein
Length: 264 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chloride pumping rhodopsin
UniProt: W8VZW3
Ligands: OLA, RET, CL
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 81% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chloride pumping rhodopsin	protein	264	81% helix, 3% strand	W8VZW3

Ligands and binding sites

OLA · Oleic acid · ligand · 7 copies · chains A
RET · Retinal · ligand · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	133	0.72	0.91	23	RET

Modifications

Observed in the structure: 1 cofactor (retinal Schiff base).

Compared structures

7CRL · Structure of Chloride ion pumping rhodopsin (ClR) with NTQ motif 50 ps after light… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8VZW3
Elsewhere: RCSB PDB 7CRL · PDBe 7CRL · UniProt W8VZW3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.