Research workbench
Transglutaminase from geobacillus stearothermophilus (without C- terminal extension)
Analyse Transglutaminase from geobacillus stearothermophilus (without C- terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C9J
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein-glutamine gamma-glutamyltransferase
- EC
- 2.3.2.13
- UniProt
- A0A3L7D5Y5
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13) | protein | 207 | 39% helix, 23% strand | A0A3L7D5Y5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.36 | 0.75 | 24 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 7C9J · Transglutaminase from Geobacillus stearothermophilus (without C-terminal extension) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3L7D5Y5
- Elsewhere: RCSB PDB 7C9J · PDBe 7C9J · UniProt A0A3L7D5Y5
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