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Biofilm associated protein - bsp domain

Analyse Biofilm associated protein - bsp domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7C7U
Type: protein
Length: 1,156 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Biofilm-associated surface protein
UniProt: Q79LN3
Ligands: CA
Pockets: 15 · best druggability 0.86

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Biofilm-associated surface protein	protein	579	11% helix, 41% strand	Q79LN3
B	Biofilm-associated surface protein	protein	577	10% helix, 42% strand	Q79LN3

Ligands and binding sites

CA · Calcium ion · metal · 10 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

15 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1070	0.86	0.87	120	empty
2	123	0.63	0.87	21	empty
3	126	0.63	0.87	22	empty
4	128	0.61	0.86	21	empty
5	177	0.59	0.82	23	empty

Interfaces

1 interface between chains.

A–B · 1492 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

7C7U · Biofilm associated protein - BSP domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q79LN3
Elsewhere: RCSB PDB 7C7U · PDBe 7C7U · UniProt Q79LN3

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