Research workbench
Ancestral L-amino acid oxidase (anclaao-N5) L-phe binding form
Analyse Ancestral L-amino acid oxidase (anclaao-N5) L-phe binding form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C4N
- Type
- protein
- Length
- 614 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ancestral L-amino acid oxidase
- Ligands
- FAD, PHE
- Pockets
- 7 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ancestral L-amino acid oxidase | protein | 614 | 42% helix, 21% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 818 | 0.83 | 0.86 | 103 | FAD, PHE |
| 2 | 161 | 0.76 | 0.93 | 29 | empty |
| 3 | 305 | 0.71 | 0.84 | 37 | empty |
| 4 | 271 | 0.55 | 0.76 | 28 | empty |
| 5 | 121 | 0.48 | 0.79 | 16 | empty |
Compared structures
- 7C4N · Ancestral L-amino acid oxidase (AncLAAO-N5) L-Phe binding form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C4N · PDBe 7C4N
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.