Research workbench
Anncestral L-amino acid oxidase (anclaao-N5) L-gln binding form
Analyse Anncestral L-amino acid oxidase (anclaao-N5) L-gln binding form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C4L
- Type
- protein
- Length
- 611 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-amino acid oxidase
- Ligands
- FAD, GLN
- Pockets
- 7 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-amino acid oxidase | protein | 611 | 40% helix, 21% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1109 | 0.86 | 0.87 | 115 | FAD, GLN |
| 2 | 162 | 0.76 | 0.92 | 28 | empty |
| 3 | 239 | 0.51 | 0.75 | 28 | empty |
| 4 | 175 | 0.49 | 0.77 | 29 | empty |
| 5 | 106 | 0.47 | 0.79 | 17 | empty |
Compared structures
- 7C4L · Anncestral L-amino acid oxidase (AncLAAO-N5) L-Gln binding form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C4L · PDBe 7C4L
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