Research workbench
Crystal structure of glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid 3-O-monoglucuronide
Analyse Crystal structure of glycyrrhiza uralensis UGT73P12 complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C2X
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase
- EC
- 2.4.1.-
- UniProt
- A0A5A4WN00
- Ligands
- UDP, FJL
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyltransferase (EC 2.4.1.-) | protein | 490 | 52% helix, 14% strand | A0A5A4WN00 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- FJL · (2~{S},3~{S},4~{S},5~{R},6~{R})-6-[[(3~{S},4~{A}~{R}, 6~{A}~{R},6~{B}~{S},8~{A}~{S},11~{S},12~{A}~{R}, 14~{A}~{R},14~{B}~{S})-11-carboxy-4,4,6~{A},6~{B}, 8~{A},11,14~{B}-heptamethyl-14-oxidanylidene-2,3, 4~{A},5,6,7,8,9,10,12,12~{A},14~{A}-dodecahydro-1~{H}-picen-3-yl]oxy]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 892 | 0.83 | 0.84 | 91 | UDP, FJL |
Compared structures
- 7C2X · Crystal Structure of Glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5A4WN00
- Elsewhere: RCSB PDB 7C2X · PDBe 7C2X · UniProt A0A5A4WN00
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