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Pqqc, pyrroloquinolinquinone synthase C

Analyse Pqqc, pyrroloquinolinquinone synthase C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OTV
Type: protein
Length: 508 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coenzyme pqq synthesis protein C
UniProt: P27505
Pockets: 8 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Coenzyme pqq synthesis protein C	protein	254	64% helix, 0% strand	P27505

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	684	0.80	0.85	60	empty
2	537	0.78	0.85	61	empty
3	81	0.76	0.98	32	empty
4	94	0.73	0.94	20	empty
5	112	0.71	0.92	20	empty

Interfaces

1 interface between chains.

A–B · 2235 Å² buried · 34 hydrogen bonds · protein-protein

Compared structures

1OTV · PqqC, Pyrroloquinolinqui Synthase C · the same entry in another collection · chain A against A, TM-score 1.00
P27505 · AlphaFold monomer V2.0 prediction for pyrroloquinoline-quinone synthase (P27505) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P27505
Elsewhere: RCSB PDB 1OTV · PDBe 1OTV · UniProt P27505

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