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Crystal structure of C-terminal fragment of pilus adhesin spac from lactobacillus rhamnosus gg-iodide soaked

Analyse Crystal structure of C-terminal fragment of pilus adhesin spac from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BVX
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pilus assembly protein
UniProt: A0A1Y0DVK9
Ligands: IOD
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pilus assembly protein	protein	258	2% helix, 45% strand	A0A1Y0DVK9

Ligands and binding sites

IOD · Iodide ion · ion · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	283	0.71	0.85	46	empty
2	69	0.66	0.93	29	empty
3	88	0.39	0.77	21	empty

Modifications

Observed in the structure: 2 isopeptide (isopeptide).

Compared structures

7BVX · Crystal structure of C-terminal fragment of pilus adhesin SpaC from Lactobacillus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1Y0DVK9
Elsewhere: RCSB PDB 7BVX · PDBe 7BVX · UniProt A0A1Y0DVK9

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