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Crystal structure of nvwrap-T, a 7-bladed symmetric propeller

Analyse Crystal structure of nvwrap-T, a 7-bladed symmetric propeller in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BIE
Type: protein
Length: 572 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nvwrap-T
UniProt: B2J0I0
Pockets: 5 · best druggability 0.88

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Nvwrap-T	protein	286	0% helix, 56% strand	B2J0I0

Ligands and binding sites

CIT · Citric acid · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1113	0.88	0.89	99	empty
2	65	0.38	0.79	20	empty
3	59	0.34	0.77	20	empty
4	76	0.33	0.75	24	empty
5	50	0.30	0.77	16	empty

Interfaces

1 interface between chains.

A–B · 928 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

7BIE · Crystal structure of nvWrap-T, a 7-bladed symmetric propeller · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2J0I0
Elsewhere: RCSB PDB 7BIE · PDBe 7BIE · UniProt B2J0I0

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