Research workbench
In meso structure of the membrane integral lipoprotein intramolecular transacylase lit from bacillus cereus with H85A mutation
Analyse In meso structure of the membrane integral lipoprotein intramolecular… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7B0Q
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical membrane spanning protein
- UniProt
- Q813T3
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical membrane spanning protein | protein | 220 | 77% helix, 0% strand | Q813T3 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 7 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- CIT · Citric acid · additive · 2 copies · chains A
- PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 836 | 0.74 | 0.78 | 52 | OLC |
| 2 | 57 | 0.28 | 0.74 | 18 | empty |
Compared structures
- 7B0Q · In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q813T3
- Elsewhere: RCSB PDB 7B0Q · PDBe 7B0Q · UniProt Q813T3
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