Research workbench
The SARS-cov-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10MER ssrna
Analyse The SARS-cov-2 nucleocapsid phosphoprotein N-terminal domain in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ACT
- Type
- protein + RNA
- Length
- 147 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein; Ssrna
- UniProt
- P0DTC9
- Pockets
- 3 · best druggability 0.48
Structure
solution nmr · 2 distinct chains · 10% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 137 | 10% helix, 18% strand | P0DTC9 |
| B | Ssrna | rna | 10 | — | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.48 | 0.86 | 18 | empty |
| 2 | 67 | 0.45 | 0.83 | 12 | empty |
| 3 | 59 | 0.25 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1279 Ų buried · 45 hydrogen bonds · protein-nucleic
Compared structures
- 7ACT · The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC9
- Elsewhere: RCSB PDB 7ACT · PDBe 7ACT · UniProt P0DTC9
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