Research workbench
In meso structure of the alginate exporter, alge, from pseudomonas aeruginosa in 9.8 monoacylglycerol
Analyse In meso structure of the alginate exporter, alge, from pseudomonas aeruginosa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ACG
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate biosynthesis protein alge
- UniProt
- A0A080VSR9
- Ligands
- LH9, NA, SO4
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alginate biosynthesis protein alge | protein | 457 | 1% helix, 54% strand | A0A080VSR9 |
Ligands and binding sites
- LH9 · [(2~{S})-2,3-bis(oxidanyl)propyl] heptadec-9-enoate · ligand · 10 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- 1PE · Pentaethylene glycol · additive · chains A
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · chains A
- CIT · Citric acid · additive · chains A
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.79 | 0.97 | 29 | CIT |
| 2 | 823 | 0.78 | 0.82 | 94 | SO4, PG0 |
| 3 | 835 | 0.74 | 0.79 | 81 | 1PE |
Compared structures
- 7ACG · In meso structure of the alginate exporter, AlgE, from Pseudomonas aeruginosa in 9.8… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A080VSR9
- Elsewhere: RCSB PDB 7ACG · PDBe 7ACG · UniProt A0A080VSR9
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