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Crystal structure of human protein kinase CK2ALPHA (CSNK2A1 gene product) in complex with the ATP-competitive inhibitor 5,6,7- tribromo-1H-TRIAZOLO[4,5-B]PYRIDINE

Analyse Crystal structure of human protein kinase CK2ALPHA (CSNK2A1 gene product) in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7A4C
Type
protein
Length
668 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Casein kinase II subunit alpha
EC
2.7.11.1
UniProt
P68400
Ligands
QWW, SO4
Pockets
4 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BCasein kinase II subunit alpha (EC 2.7.11.1)protein33441% helix, 16% strandP68400

Ligands and binding sites

  • QWW · 5,6,7-tris(bromanyl)-1~{H}-[1,2,3]triazolo[4,5-b]pyridine · ligand · 2 copies · chains A, B
  • SO4 · Sulfate ion · ion · 6 copies · chains A, B
  • GOL · Glycerol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
111570.820.83116SO4, QWW
24050.680.8052QWW, GOL, SO4
3530.330.7714empty
4810.330.7420SO4

Interfaces

1 interface between chains.

  • A–B · 551 Ų buried · 7 hydrogen bonds · protein-protein

Compared structures

  • 7A4C · Crystal structure of human protein kinase CK2alpha (CSNK2A1 gene product) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • P68400 · AlphaFold monomer V2.0 prediction for casein kinase II subunit alpha (P68400) · a predicted model of the same protein · chain A against A, TM-score 1.00

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