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Cold-adapted beta-D-galactosidase from arthrobacter sp. 32CB mutant D207A in complex with galactose

Analyse Cold-adapted beta-D-galactosidase from arthrobacter sp. 32CB mutant D207A in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZJW
Type: protein
Length: 989 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-galactosidase
EC: 3.2.1.23
UniProt: A0A023UGN9
Ligands: GAL
Pockets: 14 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-galactosidase (EC 3.2.1.23)	protein	989	17% helix, 37% strand	A0A023UGN9

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	199	0.66	0.85	29	GAL
2	232	0.56	0.79	43	empty
3	210	0.54	0.78	31	empty
4	64	0.52	0.87	17	empty
5	99	0.50	0.82	17	empty

Compared structures

6ZJW · Cold-adapted beta-D-galactosidase from Arthrobacter sp. 32cB mutant D207A in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A023UGN9
Elsewhere: RCSB PDB 6ZJW · PDBe 6ZJW · UniProt A0A023UGN9

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