Research workbench
Firefly luciferase in complex with bromoform
Analyse Firefly luciferase in complex with bromoform in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BA3
- Type
- protein
- Length
- 540 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Luciferase
- EC
- 1.13.12.7
- UniProt
- P08659
- Ligands
- MBR
- Pockets
- 6 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Luciferase (EC 1.13.12.7) | protein | 540 | 32% helix, 24% strand | P08659 |
Ligands and binding sites
- MBR · Tribromomethane · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 829 | 0.74 | 0.78 | 96 | MBR |
| 2 | 76 | 0.49 | 0.84 | 14 | MBR |
| 3 | 61 | 0.43 | 0.82 | 17 | empty |
| 4 | 76 | 0.36 | 0.77 | 17 | empty |
| 5 | 75 | 0.33 | 0.74 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08659
- Elsewhere: RCSB PDB 1BA3 · PDBe 1BA3 · UniProt P08659
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.