Research workbench
Composite model of the caulobacter crescentus S-layer bound to the O- antigen of lipopolysaccharide
Analyse Composite model of the caulobacter crescentus S-layer bound to the O- antigen… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z7P
- Type
- protein
- Length
- 1,025 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-layer protein
- UniProt
- P35828
- Ligands
- MRH, BMA, CA
- Pockets
- 2 · best druggability 0.38
Structure
electron microscopy · 1 distinct chain · 18% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S-layer protein | protein | 1025 | 18% helix, 32% strand | P35828 |
Ligands and binding sites
- MRH · 4-acetamido-4,6-dideoxy-alpha-D-mannopyranose · ligand · 6 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 3 copies · chains A
- CA · Calcium ion · metal · 22 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.38 | 0.76 | 17 | empty |
| 2 | 50 | 0.26 | 0.74 | 14 | empty |
Compared structures
- 6Z7P · Composite model of the Caulobacter crescentus S-layer bound to the O-antigen of… · the same entry in another collection · chain A against A, TM-score 1.00
- P35828 · AlphaFold monomer V2.0 prediction for S-layer protein (P35828) · a predicted model of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35828
- Elsewhere: RCSB PDB 6Z7P · PDBe 6Z7P · UniProt P35828
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