Eed in complex with a cyano-benzofuran

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 49% strand (DSSP).

Ligands and binding sites

• L9W · N-(2,3-dihydro-1-benzofuran-4-ylmethyl)-8-(4-methylsulfonylphenyl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine · ligand · chains A
• PV5 · 5-fluoranyl-4-[[[8-(2-methylpyridin-3-yl)-[1,2, 4]triazolo[4,3-c]pyrimidin-5-yl]amino]methyl]-2,3-dihydro-1-benzofuran-7-carbonitrile · ligand · chains B
• CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 225 Ų buried · 1 hydrogen bond · protein-protein

Compared structures

• 6YVI · EED in complex with a cyano-benzofuran · the same entry in another collection · chain A against A, TM-score 1.00
• O75530 · AlphaFold monomer V2.0 prediction for polycomb protein eed (O75530) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt O75530
• Elsewhere: RCSB PDB 6YVI · PDBe 6YVI · UniProt O75530