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Structure of FGCHI7B

Analyse Structure of FGCHI7B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6YJO
Type: protein
Length: 475 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FAD-binding pcmh-type domain-containing protein
UniProt: A0A098DND1
Ligands: FAD, NAG, BMA
Pockets: 3 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	FAD-binding pcmh-type domain-containing protein	protein	475	35% helix, 21% strand	A0A098DND1

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
BMA · beta-D-mannopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	617	0.83	0.88	68	FAD
2	68	0.58	0.89	21	empty
3	105	0.36	0.73	16	empty

Modifications

Observed in the structure: 2 cofactor, 1 disulfide, 1 glycan (flavinylation, disulfide, N-glycosylation).

Compared structures

6YJO · Structure of FgChi7B · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A098DND1
Elsewhere: RCSB PDB 6YJO · PDBe 6YJO · UniProt A0A098DND1

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