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FKBP12 in complex with the bmp potentiator compound 10 at 1.00A resolution

Analyse FKBP12 in complex with the bmp potentiator compound 10 at 1.00A resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6YF3
Type
protein
Length
108 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P62942
Ligands
OOZ, CD, NA, CL

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein108—P62942

Ligands and binding sites

  • OOZ · (1~{R},9~{S},12~{S},13~{R},14~{S},17~{R},18~{E},21~{S}, 23~{S},24~{R},25~{S},27~{R})-17-ethyl-25-methoxy-12-[(~{E})-1-[(1~{R},3~{R},4~{R})-3-methoxy-4-oxidanyl-cyclohexyl]prop-1-en-2-yl]-13,19,21,27-tetramethyl-1, 14,23-tris(oxidanyl)-11,28-dioxa-4-azatricyclo[22.3.1.0^{4,9}]octacos-18-ene-2,3,10,16-tetrone · ligand · chains A
  • CD · Cadmium ion · metal · chains A
  • NA · Sodium ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YF3 · FKBP12 in complex with the BMP potentiator compound 10 at 1.00A resolution · the same entry in another collection · chain A against A, TM-score 1.00
  • P62942 · AlphaFold monomer V2.0 prediction for peptidyl-prolyl cis-trans isomerase FKBP1A (P62942) · a predicted model of the same protein · chain A against A, TM-score 0.97

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