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Crystal structure of asgpr 1 in complex with gn-a.

Analyse Crystal structure of asgpr 1 in complex with gn-a. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6YAU
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Asialoglycoprotein receptor 1
UniProt: P07306
Ligands: OJB, CA

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Asialoglycoprotein receptor 1	protein	129	16% helix, 28% strand	P07306

Ligands and binding sites

OJB · 5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-~{N}-[3-(propanoylamino)propyl]pentanamide · ligand · chains A
CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

6YAU · Crystal structure of asgpr 1 in complex with gn-a. · the same entry in another collection · chain A against A, TM-score 1.00
P07306 · AlphaFold monomer V2.0 prediction for asialoglycoprotein receptor 1 (P07306) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07306
Elsewhere: RCSB PDB 6YAU · PDBe 6YAU · UniProt P07306

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