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Active yidc insertase crystal structure with the first transmembrane domain resolved

Analyse Active yidc insertase crystal structure with the first transmembrane domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6Y86
Type: protein
Length: 425 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Membrane protein insertase yidc
UniProt: Q9X1H2
Pockets: 4 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane protein insertase yidc	protein	425	39% helix, 22% strand	Q9X1H2

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	987	0.77	0.79	79	empty
2	281	0.58	0.78	28	empty
3	75	0.32	0.74	14	empty
4	52	0.30	0.75	11	empty

Compared structures

6Y86 · Active YidC insertase crystal structure with the first transmembrane domain resolved · the same entry in another collection · chain A against A, TM-score 1.00
Q9X1H2 · AlphaFold monomer V2.0 prediction for membrane protein insertase yidc (Q9X1H2) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1H2
Elsewhere: RCSB PDB 6Y86 · PDBe 6Y86 · UniProt Q9X1H2

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