Research workbench
Bacteriophytochrome response regulator from deinococcus radiodurans
Analyse Bacteriophytochrome response regulator from deinococcus radiodurans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XVU
- Type
- protein
- Length
- 560 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Response regulator
- UniProt
- Q9RZA5
- Ligands
- CA
- Pockets
- 2 · best druggability 0.33
Structure
x-ray diffraction · 3 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Response regulator | protein | 140 | 44% helix, 19% strand | Q9RZA5 |
| C | Response regulator | protein | 139 | 46% helix, 19% strand | Q9RZA5 |
| D | Response regulator | protein | 141 | 44% helix, 18% strand | Q9RZA5 |
Ligands and binding sites
- CA · Calcium ion · metal · 9 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.33 | 0.73 | 24 | empty |
| 2 | 62 | 0.28 | 0.73 | 20 | empty |
Interfaces
3 interfaces between chains.
- C–D · 1168 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 1137 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 278 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6XVU · Bacteriophytochrome response regulator from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RZA5
- Elsewhere: RCSB PDB 6XVU · PDBe 6XVU · UniProt Q9RZA5
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