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Crystal structure of inactive enzymatic binary toxin component from clostridium difficile
Analyse Crystal structure of inactive enzymatic binary toxin component from clostridium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6X6W
- Type
- protein
- Length
- 410 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ADP-ribosyltransferase
- UniProt
- F5B5W8
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | ADP-ribosyltransferase | protein | 410 | 38% helix, 28% strand | F5B5W8 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.55 | 0.79 | 37 | empty |
| 2 | 304 | 0.54 | 0.75 | 35 | empty |
| 3 | 79 | 0.50 | 0.84 | 16 | empty |
| 4 | 143 | 0.44 | 0.76 | 20 | empty |
| 5 | 77 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 6X6W · Crystal structure of inactive enzymatic binary toxin component from Clostridium difficile · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F5B5W8
- Elsewhere: RCSB PDB 6X6W · PDBe 6X6W · UniProt F5B5W8
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