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Structure of the receptor-binding domain of the bacteriophage T4 short tail fibre

Analyse Structure of the receptor-binding domain of the bacteriophage T4 short tail… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OCY
Type: protein
Length: 198 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriophage T4 short tail fibre
UniProt: Q38160
Ligands: ZN, SO4
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacteriophage T4 short tail fibre	protein	198	13% helix, 10% strand	Q38160

Ligands and binding sites

ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	300	0.55	0.75	30	empty
2	234	0.55	0.77	24	empty

Compared structures

1OCY · Structure of the receptor-binding domain of the bacteriophage T4 short tail fibre · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q38160
Elsewhere: RCSB PDB 1OCY · PDBe 1OCY · UniProt Q38160

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