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Crystal structure of the three-domain cyclomaltodextrin glucanotransferase clda in the monomeric form

Analyse Crystal structure of the three-domain cyclomaltodextrin glucanotransferase clda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6WNU
Type: protein
Length: 494 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyclomaltodextrin glucanotransferase
EC: 2.4.1.19
UniProt: U5CJP3
Ligands: CA
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cyclomaltodextrin glucanotransferase (EC 2.4.1.19)	protein	494	31% helix, 24% strand	U5CJP3

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A
ACT · Acetate ion · additive · 4 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	417	0.65	0.79	52	ACT, PEG
2	126	0.45	0.77	26	empty

Compared structures

6WNU · Crystal structure of the three-domain cyclomaltodextrin glucanotransferase CldA in the… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt U5CJP3
Elsewhere: RCSB PDB 6WNU · PDBe 6WNU · UniProt U5CJP3

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