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Crystal structure of human ribokinase in complex with amppcp and ribose

Analyse Crystal structure of human ribokinase in complex with amppcp and ribose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6WK0
Type: protein
Length: 1,261 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9H477
Ligands: ACP, RIB, NA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	317	—	Q9H477
B	—	protein	311	—	Q9H477
D	—	protein	316	—	Q9H477

Ligands and binding sites

ACP · Phosphomethylphosphonic acid adenylate ester · ligand · 4 copies · chains A, B, C, D
RIB · alpha-D-ribofuranose · ligand · 2 copies · chains B, C
NA · Sodium ion · metal · 8 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6WK0 · Crystal structure of human ribokinase in complex with AMPPCP and ribose · the same entry in another collection · chain A against A, TM-score 1.00
Q9H477 · AlphaFold monomer V2.0 prediction for ribokinase (Q9H477) · a predicted model of the same protein · chain D against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H477
Elsewhere: RCSB PDB 6WK0 · PDBe 6WK0 · UniProt Q9H477

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