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APE1 Y269A phosphorothioate substrate complex with abasic DNA

Analyse APE1 Y269A phosphorothioate substrate complex with abasic DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6W4T
Type
protein + DNA
Length
636 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P27695

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein276—P27695
P, C—dna21——
V, F—dna21——

Compared structures

  • 6W4T · APE1 Y269A phosphorothioate substrate complex with abasic DNA · the same entry in another collection · chain F against F, TM-score 1.00
  • P27695 · AlphaFold monomer V2.0 prediction for DNA-(apurinic or apyrimidinic site) endonuclease… · a predicted model of the same protein · chain A against A, TM-score 1.00

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