Research workbench
Crystal structure of the hydroxyglutarate synthase from pseudomonas putida
Analyse Crystal structure of the hydroxyglutarate synthase from pseudomonas putida in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W1G
- Type
- protein
- Length
- 434 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydroxyglutarate synthase
- UniProt
- Q88CC1
- Ligands
- NI
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxyglutarate synthase | protein | 434 | 51% helix, 17% strand | Q88CC1 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 680 | 0.73 | 0.79 | 55 | NI |
| 2 | 263 | 0.71 | 0.86 | 34 | empty |
| 3 | 99 | 0.36 | 0.75 | 22 | empty |
| 4 | 71 | 0.34 | 0.76 | 17 | empty |
Compared structures
- 6W1G · Crystal structure of the hydroxyglutarate synthase from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88CC1
- Elsewhere: RCSB PDB 6W1G · PDBe 6W1G · UniProt Q88CC1
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