Research workbench
Cryo-EM structure of STH1-ARP7-ARP9-RTT102
Analyse Cryo-EM structure of STH1-ARP7-ARP9-RTT102 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VZG
- Type
- protein
- Length
- 906 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q12406, Q05123, P32597, P53330
- Ligands
- ATP
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 393 | — | Q12406 |
| M | — | protein | 396 | — | Q05123 |
| K | — | protein | 62 | — | P32597 |
| N | — | protein | 55 | — | P53330 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VZG · Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 · the same entry in another collection · chain N against N, TM-score 1.00
- Q05123 · AlphaFold monomer V2.0 prediction for actin-like protein ARP9 (Q05123) · a predicted model of the same protein · chain M against A, TM-score 0.98
- Q12406 · AlphaFold monomer V2.0 prediction for actin-related protein 7 (Q12406) · a predicted model of the same protein · chain L against A, TM-score 0.97
- P32597 · AlphaFold monomer V2.0 prediction for nuclear protein STH1/NPS1 (P32597) · a predicted model of the same protein · chain K against A, TM-score 0.75
- P53330 · AlphaFold monomer V2.0 prediction for regulator of TY1 transposition protein 102 (P53330) · a predicted model of the same protein · chain N against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12406
- Every structure of UniProt Q05123
- Every structure of UniProt P32597
- Every structure of UniProt P53330
- Elsewhere: RCSB PDB 6VZG · PDBe 6VZG · UniProt Q12406 · UniProt Q05123 · UniProt P32597 · UniProt P53330
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