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C-terminal domain of mouse surfactant protein B crystallized at high pH

Analyse C-terminal domain of mouse surfactant protein B crystallized at high pH in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VZ0
Type: protein
Length: 150 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pulmonary surfactant-associated protein B
UniProt: P50405
Ligands: ZN

Structure

x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pulmonary surfactant-associated protein B	protein	74	77% helix, 0% strand	P50405
B	Pulmonary surfactant-associated protein B	protein	76	79% helix, 0% strand	P50405

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1492 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

6VZ0 · C-terminal domain of mouse surfactant protein B crystallized at high pH · the same entry in another collection · chain A against A, TM-score 1.00
P50405 · AlphaFold monomer V2.0 prediction for pulmonary surfactant-associated protein B (P50405) · a predicted model of the same protein · chain A against A, TM-score 0.49

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P50405
Elsewhere: RCSB PDB 6VZ0 · PDBe 6VZ0 · UniProt P50405

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