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CAP3G-tar-F1 is an RNA hairpin. the 1H-1H noesy data was collected at 308 K in 10 mm KH2PO4 pH 7.4.

Analyse CAP3G-tar-F1 is an RNA hairpin. the 1H-1H noesy data was collected at 308 K in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VU1
Type: RNA
Length: 33 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (34-mer)
Ligands: 8NK
Pockets: 1 · best druggability 0.25

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (34-mer)	rna	33	—	—

Ligands and binding sites

8NK · 7-methylguanosine 5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.25	0.71	14	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

6VU1 · Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6VU1 · PDBe 6VU1

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