Research workbench

SILV44 T cell receptor bound to HLA-A2 presenting GP100T2M peptide (imdqvpfsv)

Analyse SILV44 T cell receptor bound to HLA-A2 presenting GP100T2M peptide (imdqvpfsv) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VM8
Type: protein
Length: 821 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A5B8RNS7, P61769, P40967

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	275	—	A0A5B8RNS7
E	—	protein	241	—	—
D	—	protein	196	—	—
B	—	protein	100	—	P61769
C	—	protein	9	—	P40967

Ligands and binding sites

FLC · Citrate anion · additive · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VM8 · SILv44 T cell receptor bound to HLA-A2 presenting gp100T2M peptide (IMDQVPFSV) · the same entry in another collection · chain E against E, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.99
P40967 · AlphaFold monomer V2.0 prediction for melanocyte protein pmel (P40967) · a predicted model of the same protein · chain C against A, TM-score 0.45

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A5B8RNS7
Every structure of UniProt P61769
Every structure of UniProt P40967
Elsewhere: RCSB PDB 6VM8 · PDBe 6VM8 · UniProt A0A5B8RNS7 · UniProt P61769 · UniProt P40967

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