Research workbench
Structure of the glutamate-like receptor GLR3.2 ligand-binding domain in complex with glycine
Analyse Structure of the glutamate-like receptor GLR3.2 ligand-binding domain in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VEA
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate receptor 3.2
- UniProt
- Q93YT1
- Ligands
- GLY, NA
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate receptor 3.2 | protein | 240 | 35% helix, 23% strand | Q93YT1 |
Ligands and binding sites
- GLY · Glycine · ligand · chains A
- NA · Sodium ion · metal · chains A
- BME · Beta-mercaptoethanol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.37 | 0.74 | 32 | empty |
| 2 | 59 | 0.32 | 0.76 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6VEA · Structure of the Glutamate-Like Receptor GLR3.2 ligand-binding domain in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q93YT1 · AlphaFold monomer V2.0 prediction for glutamate receptor 3.2 (Q93YT1) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93YT1
- Elsewhere: RCSB PDB 6VEA · PDBe 6VEA · UniProt Q93YT1
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