Peanut lectin complexed with S-beta-D-thiogalactopyranosyl beta-D- glucopyranoside derivative (stgd)

Structure

x-ray diffraction · 1 distinct chain.

Ligands and binding sites

• QWG · (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5S, 6S)-3,4,5-trihydroxy-6-({[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]sulfanyl}methyl) tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-3,4,5-triol (non-preferred name) · ligand · 4 copies · chains A, B, C, D
• MN · Manganese (II) ion · metal · 4 copies · chains A, B, C, D
• CA · Calcium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6VC4 · Peanut lectin complexed with S-beta-D-Thiogalactopyranosyl beta-D-glucopyranoside… · the same entry in another collection · chain A against A, TM-score 1.00
• P02872 · AlphaFold monomer V2.0 prediction for galactose-binding lectin (P02872) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P02872
• Elsewhere: RCSB PDB 6VC4 · PDBe 6VC4 · UniProt P02872