Research workbench
1.85 ångström resolution crystal structure of N-terminal domain of two-component system response regulator from acinetobacter baumannii
Analyse 1.85 ångström resolution crystal structure of N-terminal domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VBF
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Two-component regulatory system response regulator
- UniProt
- A0A380UY17
- Ligands
- CA, CL
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Two-component regulatory system response regulator | protein | 120 | 43% helix, 20% strand | A0A380UY17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.52 | 0.77 | 27 | empty |
| 2 | 52 | 0.52 | 0.87 | 19 | empty |
| 3 | 53 | 0.44 | 0.83 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1021 Ų buried · 25 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 6VBF · 1.85 Angstrom Resolution Crystal Structure of N-terminal Domain of Two-component System… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A380UY17
- Elsewhere: RCSB PDB 6VBF · PDBe 6VBF · UniProt A0A380UY17
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