Research workbench
Crystal structure of type VI secretion system effector, tseh (VCA0285)
Analyse Crystal structure of type VI secretion system effector, tseh (VCA0285) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V98
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine hydrolase
- UniProt
- A0A0H7IDZ2
- Ligands
- CA
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine hydrolase | protein | 183 | 26% helix, 28% strand | A0A0H7IDZ2 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.52 | 0.85 | 16 | empty |
| 2 | 59 | 0.34 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 6V98 · Crystal structure of Type VI secretion system effector, TseH (VCA0285) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H7IDZ2
- Elsewhere: RCSB PDB 6V98 · PDBe 6V98 · UniProt A0A0H7IDZ2
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