Research workbench
Culex quinquefasciatus D7 long form 1- CXD7L1 in complex with ADP
Analyse Culex quinquefasciatus D7 long form 1- CXD7L1 in complex with ADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V4C
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Long form D7CLU1 salivary protein
- UniProt
- Q95V93
- Ligands
- ETX, ADP, ZN
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Long form D7CLU1 salivary protein | protein | 294 | 64% helix, 1% strand | Q95V93 |
Ligands and binding sites
- ETX · 2-ethoxyethanol · ligand · 2 copies · chains A
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 401 | 0.69 | 0.81 | 43 | GOL, EDO |
| 2 | 119 | 0.54 | 0.83 | 21 | ADP, GOL |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 6V4C · Culex quinquefasciatus D7 long form 1- CxD7L1 in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95V93
- Elsewhere: RCSB PDB 6V4C · PDBe 6V4C · UniProt Q95V93
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