Research workbench
Crystal structure of bacterial pirin yhhw in complex with NICKEL(II) from escherichia COLI
Analyse Crystal structure of bacterial pirin yhhw in complex with NICKEL(II) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UTS
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Quercetin 2,3-dioxygenase
- UniProt
- A0A4S5WTB9
- Ligands
- NI
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Quercetin 2,3-dioxygenase | protein | 229 | 3% helix, 50% strand | A0A4S5WTB9 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.53 | 0.87 | 20 | empty |
| 2 | 66 | 0.47 | 0.84 | 24 | empty |
Compared structures
- 6UTS · Crystal Structure of bacterial pirin YhhW in complex with nickel(II) from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4S5WTB9
- Elsewhere: RCSB PDB 6UTS · PDBe 6UTS · UniProt A0A4S5WTB9
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