Research workbench
Sting C-terminal domain complexed with non-cyclic dinucleotide compound 10
Analyse Sting C-terminal domain complexed with non-cyclic dinucleotide compound 10 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UKW
- Type
- protein
- Length
- 348 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fusion protein of ubiquitin-like protein SMT3 and stimulator of interferon protein…
- UniProt
- Q12306, A0A2R3XZB7
- Ligands
- QB7
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fusion protein of ubiquitin-like protein SMT3 and stimulator of interferon protein C-terminal domain | protein | 172 | 47% helix, 27% strand | Q12306, A0A2R3XZB7 |
| B | Fusion protein of ubiquitin-like protein SMT3 and stimulator of interferon protein C-terminal domain | protein | 176 | 45% helix, 26% strand | Q12306, A0A2R3XZB7 |
Ligands and binding sites
- QB7 · 4-[6-(3-{[2-(3-carboxypropanoyl)-4-fluoro-6-methoxy-1-benzothiophen-5-yl]oxy}propoxy)-5-methoxy-1-benzothiophen-2-yl]-4-oxobutanoic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.85 | 0.96 | 39 | QB7 |
Interfaces
1 interface between chains.
- A–B · 1929 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 6UKW · STING C-terminal Domain Complexed with Non-cyclic Dinucleotide Compound 10 · the same entry in another collection · chain A against A, TM-score 1.00
- Q12306 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein SMT3 (Q12306) · a predicted model of the same protein · chain A against A, TM-score 0.22
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12306
- Every structure of UniProt A0A2R3XZB7
- Elsewhere: RCSB PDB 6UKW · PDBe 6UKW · UniProt Q12306 · UniProt A0A2R3XZB7
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