Research workbench
The crystal structure of the msp domain of human MOSPD2.
Analyse The crystal structure of the msp domain of human MOSPD2. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TQT
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Motile sperm domain-containing protein 2
- UniProt
- Q8NHP6
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Motile sperm domain-containing protein 2 | protein | 131 | 10% helix, 44% strand | Q8NHP6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.37 | 0.75 | 17 | EDO |
Compared structures
- 6TQT · The crystal structure of the MSP domain of human MOSPD2. · the same entry in another collection · chain A against A, TM-score 1.00
- Q8NHP6 · AlphaFold monomer V2.0 prediction for motile sperm domain-containing protein 2 (Q8NHP6) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NHP6
- Elsewhere: RCSB PDB 6TQT · PDBe 6TQT · UniProt Q8NHP6
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