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Ftsk motor domain with dsdna, translocating state

Analyse Ftsk motor domain with dsdna, translocating state in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6T8B
Type: protein + DNA
Length: 2,410 residues
Chains: 8
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9I0M3
Ligands: AGS, ADP, MG

Structure

electron microscopy · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, F	—	protein	397	—	Q9I0M3
B	—	protein	396	—	Q9I0M3
C	—	protein	396	—	Q9I0M3
D, E	—	protein	392	—	Q9I0M3
G, H	—	dna	20	—	—

Ligands and binding sites

AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 3 copies · chains A, F, B, C
ADP · Adenosine-5'-diphosphate · ligand · 3 copies · chains D, E, F
MG · Magnesium ion · metal · 4 copies · chains A, B, C, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6T8B · FtsK motor domain with dsDNA, translocating state · the same entry in another collection · chain H against H, TM-score 1.00
Q9I0M3 · AlphaFold monomer V2.0 prediction for DNA translocase ftsk (Q9I0M3) · a predicted model of the same protein · chain F against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I0M3
Elsewhere: RCSB PDB 6T8B · PDBe 6T8B · UniProt Q9I0M3

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