Research workbench
Structure of oxalate substituted diferric mare lactoferrin from colostrum
Analyse Structure of oxalate substituted diferric mare lactoferrin from colostrum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1B7Z
- Type
- protein
- Length
- 689 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (lactoferrin)
- UniProt
- O77811
- Ligands
- OXL, FE
- Pockets
- 10 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (lactoferrin) | protein | 689 | 37% helix, 19% strand | O77811 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.79 | 0.97 | 29 | empty |
| 2 | 260 | 0.76 | 0.89 | 39 | empty |
| 3 | 280 | 0.66 | 0.82 | 36 | empty |
| 4 | 252 | 0.56 | 0.77 | 28 | empty |
| 5 | 153 | 0.47 | 0.77 | 21 | empty |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
- 1B7Z · Structure of oxalate substituted diferric mare lactoferrin from colostrum · the same entry in another collection · chain A against A, TM-score 1.00
- O77811 · AlphaFold monomer V2.0 prediction for lactotransferrin (O77811) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O77811
- Elsewhere: RCSB PDB 1B7Z · PDBe 1B7Z · UniProt O77811
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.