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NMR solution structure of calerythrin, an ef-hand calcium-binding protein

Analyse NMR solution structure of calerythrin, an ef-hand calcium-binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1NYA
Type: protein
Length: 176 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calerythrin
UniProt: P06495
Ligands: CA
Pockets: 3 · best druggability 0.78

Structure

solution nmr · 1 distinct chain · 60% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calerythrin	protein	176	60% helix, 5% strand	P06495

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	198	0.78	0.92	32	empty
2	70	0.39	0.78	10	empty
3	89	0.34	0.74	14	empty

Compared structures

1NYA · NMR solution structure of calerythrin, an ef-hand calcium-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
P06495 · AlphaFold monomer V2.0 prediction for calerythrin (P06495) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06495
Elsewhere: RCSB PDB 1NYA · PDBe 1NYA · UniProt P06495

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