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Crystal structure of B. subtilis polysaccharide deacetylase northeast structural genomics consortium target SR127.

Analyse Crystal structure of B. subtilis polysaccharide deacetylase northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1NY1
Type: protein
Length: 470 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable polysaccharide deacetylase pdaa
UniProt: O34928
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Probable polysaccharide deacetylase pdaa	protein	235	45% helix, 16% strand	O34928

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.51	0.75	30	empty
2	216	0.51	0.76	26	empty
3	64	0.29	0.74	18	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

1NY1 · Crystal structure of B. subtilis polysaccharide deacetylase northeast structural genomics… · the same entry in another collection · chain A against A, TM-score 1.00
O34928 · AlphaFold monomer V2.0 prediction for peptidoglycan-N-acetylmuramic acid deacetylase pdaa… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34928
Elsewhere: RCSB PDB 1NY1 · PDBe 1NY1 · UniProt O34928

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