Research workbench
Alpha-actinin from entamoeba histolytica in orthorhombic space group
Analyse Alpha-actinin from entamoeba histolytica in orthorhombic space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SL3
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calponin homology domain protein putative
- UniProt
- C4LWU6
- Ligands
- CA
- Pockets
- 4 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calponin homology domain protein putative | protein | 618 | 69% helix, 1% strand | C4LWU6 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.41 | 0.80 | 12 | empty |
| 2 | 92 | 0.40 | 0.77 | 14 | empty |
| 3 | 81 | 0.38 | 0.76 | 20 | empty |
| 4 | 115 | 0.37 | 0.73 | 20 | empty |
Compared structures
- 6SL3 · ALPHA-ACTININ FROM ENTAMOEBA HISTOLYTICA in orthorhombic space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4LWU6
- Elsewhere: RCSB PDB 6SL3 · PDBe 6SL3 · UniProt C4LWU6
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