Research workbench

DAB3/HOIP-rbr-LIGAND2

Analyse DAB3/HOIP-rbr-LIGAND2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SC5
Type: protein
Length: 595 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q96EP0
Ligands: L6B, ZN, SO4, CL

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	356	—	Q96EP0
B	—	protein	119	—	—
C	—	protein	120	—	—

Ligands and binding sites

L6B · methyl 4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-3-enoate · ligand · chains A
ZN · Zinc ion · metal · 8 copies · chains A
SO4 · Sulfate ion · ion · 4 copies · chains A, B
CL · Chloride ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6SC5 · dAb3/HOIP-RBR-Ligand2 · the same entry in another collection · chain A against A, TM-score 1.00
Q96EP0 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF31 (Q96EP0) · a predicted model of the same protein · chain A against A, TM-score 0.60

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96EP0
Elsewhere: RCSB PDB 6SC5 · PDBe 6SC5 · UniProt Q96EP0

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