UniProt Q96EP0
E3 ubiquitin-protein ligase RNF31 (Q96EP0)
E3 ubiquitin-protein ligase RNF31 (UniProt Q96EP0), EC 2.3.2.27, 2.3.2.31: 56 experimental structures and 1 predicted model on GenesisL1, 16 ligands bound, 110 pockets. Binding sites, druggability and experiment against…
- UniProt
- Q96EP0
- Protein
- E3 ubiquitin-protein ligase RNF31
- EC
- 2.3.2.27, 2.3.2.31, 6.3.2.-
- Experimental structures
- 56
- Predicted models
- 1
- Ligands
- 16
- Pockets
- 110 · 14 records with a druggable one
Structures
57 records of Q96EP0 in the MolNFT archive: 56 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2CT7 | Solution Structure of the IBR domain of the RING finger protein 31 protein | solution nmr | A | — | — |
| 2CT7 | Solution structure of the ibr domain of the ring finger protein 31 protein | solution nmr | A | — | — |
| 4DBG | Crystal structure of HOIL-1L-UBL complexed with a HOIP-UBA derivative | x-ray diffraction | B | — | — |
| 4DBG | Crystal structure of hoil-1L-ubl complexed with a hoip-uba derivative | x-ray diffraction | B | — | — |
| 4JUY | Crystal structure of the PUB domain of E3 ubiquitin ligase RNF31 | x-ray diffraction | A, B | — | — |
| 4JUY | Crystal structure of the pub domain of E3 ubiquitin ligase RNF31 | x-ray diffraction | A, B | — | — |
| 4LJO | Structure of an active ligase (HOIP)/ubiquitin transfer complex | x-ray diffraction | A | — | — |
| 4LJO | Structure of an active ligase (HOIP)/UBIQUITIN transfer complex | x-ray diffraction | A | — | — |
| 4LJP | Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex | x-ray diffraction | A | — | — |
| 4LJP | Structure of an active ligase (hoip-H889A)/UBIQUITIN transfer complex | x-ray diffraction | A | — | — |
| 4LJQ | Crystal structure of the catalytic core of E3 ligase HOIP | x-ray diffraction | B, A, C, D | — | — |
| 4LJQ | Crystal structure of the catalytic core of E3 ligase hoip | x-ray diffraction | B, A, C, D | — | — |
| 4OWF | Crystal structure of the NEMO CoZi in complex with HOIP NZF1 domain | x-ray diffraction | G | — | — |
| 4OWF | Crystal structure of the nemo cozi in complex with hoip NZF1 domain | x-ray diffraction | G | — | — |
| 4OYJ | Structure of the apo HOIP PUB domain | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L, M | — | — |
| 4OYJ | Structure of the apo hoip pub domain | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L, M | — | — |
| 4OYK | Structure of HOIP PUB domain bound to OTULIN PIM | x-ray diffraction | A, B | — | — |
| 4OYK | Structure of hoip pub domain bound to otulin pim | x-ray diffraction | A, B | — | — |
| 4P09 | Crystal structure of HOIP PUB domain | x-ray diffraction | A | — | — |
| 4P09 | Crystal structure of hoip pub domain | x-ray diffraction | A | — | — |
| 4P0A | Crystal structure of HOIP PUB domain in complex with p97 PIM | x-ray diffraction | A, C | — | — |
| 4P0A | Crystal structure of hoip pub domain in complex with P97 pim | x-ray diffraction | A, C | — | — |
| 4P0B | Crystal structure of HOIP PUB domain in complex with OTULIN PIM | x-ray diffraction | A, C | — | — |
| 4P0B | Crystal structure of hoip pub domain in complex with otulin pim | x-ray diffraction | A, C | — | — |
| 5EDV | Structure of the HOIP-RBR/UbcH5B~ubiquitin transfer complex | x-ray diffraction | A, B | ZN | 18 (best 0.85) |
| 5EDV | Structure of the hoip-RBR/UBCH5B~UBIQUITIN transfer complex | x-ray diffraction | A, B | — | — |
| 5LJN | Structure of the HOIP PUB domain bound to SPATA2 PIM peptide | x-ray diffraction | A, B | SO4 | — |
| 5LJN | Structure of the hoip pub domain bound to SPATA2 pim peptide | x-ray diffraction | A, B | SO4 | — |
| 5X0W | Molecular mechanism for the binding between Sharpin and HOIP | x-ray diffraction | A, C, E, G | — | 9 (best 0.73) |
| 5X0W | Molecular mechanism for the binding between sharpin and hoip | x-ray diffraction | A, C, E, G | — | — |
| 6GZY | HOIP-fragment5 complex | x-ray diffraction | A, B | FHH, ZN, SO4, NA | 6 (best 0.68) |
| 6GZY | Hoip-FRAGMENT5 complex | x-ray diffraction | A, B | FHH, ZN, SO4, NA | — |
| 6KC5 | HOIP-HOIPIN1 complex | x-ray diffraction | B | ZN, D5U | 2 (best 0.48) |
| 6KC5 | Hoip-HOIPIN1 complex | x-ray diffraction | B | ZN, D5U | — |
| 6KC6 | HOIP-HOIPIN8 complex | x-ray diffraction | A, C, E, G, I, K | ZN, D60, CL | 17 (best 0.77) |
| 6KC6 | Hoip-HOIPIN8 complex | x-ray diffraction | A, C, E, G, I, K | ZN, D60, CL | — |
| 6SC5 | dAb3/HOIP-RBR-Ligand2 | x-ray diffraction | A | L6B, ZN, SO4, CL | 7 (best 0.72) |
| 6SC5 | DAB3/HOIP-rbr-LIGAND2 | x-ray diffraction | A | L6B, ZN, SO4, CL | — |
| 6SC6 | dAb3/HOIP-RBR apo structure | x-ray diffraction | A | ZN, SO4, CL | 7 (best 0.75) |
| 6SC6 | DAB3/HOIP-rbr apo structure | x-ray diffraction | A | ZN, SO4, CL | — |
| 6SC7 | dAb3/HOIP-RBR-Ligand3 | x-ray diffraction | A | L6H, ZN, SO4, CL | 7 (best 0.74) |
| 6SC7 | DAB3/HOIP-rbr-LIGAND3 | x-ray diffraction | A | L6H, ZN, SO4, CL | — |
| 6SC8 | dAb3/HOIP-RBR-Ligand4 | x-ray diffraction | A | L6E, ZN, SO4, CL | 7 (best 0.71) |
| 6SC8 | DAB3/HOIP-rbr-LIGAND4 | x-ray diffraction | A | L6E, ZN, SO4, CL | — |
| 6SC9 | dAb3/HOIP-RBR-HOIPIN-8 | x-ray diffraction | A | L68, ZN, SO4, CL | — |
| 6SC9 | DAB3/HOIP-rbr-hoipin-8 | x-ray diffraction | A | L68, ZN, SO4, CL | — |
| 7TV4 | Crystal structure of nemo cozi in complex with hoip NZF1 and linear diubiquitin | x-ray diffraction | K | ZN | — |
| 7UY2 | Structure of RNF31 in complex with FP06649, a Helicon Polypeptide | x-ray diffraction | A, B | NH2 | 4 (best 0.72) |
| 7UYJ | Structure of RNF31 in complex with FP06652, a Helicon Polypeptide | x-ray diffraction | A, B | NH2 | 3 (best 0.69) |
| 7UYK | Structure of RNF31 in complex with FP06655, a Helicon Polypeptide | x-ray diffraction | A, B | NH2, WHL | 3 (best 0.71) |
| 7V8F | Crystal structure of UBE2L3 bound to hoip RING1 domain. | x-ray diffraction | B | ZN | — |
| 7V8G | Crystal structure of hoip RING1 domain bound to IPAH1.4 lrr domain | x-ray diffraction | D, C | ZN | — |
| 8Z30 | Crystal structure of HOIP PUB domain in complex with tolfenamic acid complex | x-ray diffraction | A, B, C | TLF, TOE | 5 (best 0.78) |
| 8Z36 | Crystal structure of HOIP PUB domain in complex with sertraline complex | x-ray diffraction | A, B, C | SRE | 7 (best 0.74) |
| 9B0B | Structure of Optineurin bound to HOIP NZF1 domain | x-ray diffraction | G, E | ZN | — |
| 9B12 | Structure of Optineurin bound to HOIP NZF1 domain and M1-linked diubiquitin, crystal form 1 | x-ray diffraction | G, H, I, J | CL, ZN | — |
| Q96EP0 | AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF31 (Q96EP0) | predicted | A | — | 8 (best 0.73) |
Ligands
- ZN · Zinc ion · in 22 records
- SO4 · Sulfate ion · in 14 records
- CL · Chloride ion · in 13 records
- NH2 · Amino group · in 3 records
- D5U · 2-[3-(2-methoxyphenyl)-3-oxidanylidene-propyl]benzoic acid · in 2 records
- D60 · 2-[3-[2,6-bis(fluoranyl)-4-(1~{H}-pyrazol-4-yl)phenyl]-3-oxidanylidene-propyl]-4-(1-methylpyrazol-4-yl) benzoic acid · in 2 records
- FHH · Methyl 4-[(2-oxidanylidene-1,5,6,7-tetrahydrocyclopenta[b]pyridin-3-yl) carbonylamino]butanoate · in 2 records
- L68 · 2-[3-[2,6-bis(fluoranyl)-4-(1~{H}-pyrazol-4-yl)phenyl]-3-oxidanylidene-prop-1-enyl]-4-(1-methylpyrazol-4-yl) benzoic acid · in 2 records
- L6B · methyl 4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-3-enoate · in 2 records
- L6E · [2-(methylamino)-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl) carbonylamino]but-2-enoate · in 2 records
- L6H · [2-[3-(cyclooct-4-en-1-yloxycarbonylamino)propylamino]-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6, 7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-2-enoate · in 2 records
- NA · Sodium ion · in 2 records
- SRE · (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine · in 1 record
- TLF · 2-[(3-chloro-2-methylphenyl)amino]benzoic acid · in 1 record
- TOE · 2-[2-(2-methoxy-ethoxy)-ethoxy]-ethoxyl · in 1 record
- WHL · N,N'-(1,4-phenylene)diacetamide · in 1 record
Experiment against prediction
- 7UY2 chain B against the predicted model Q96EP0: TM-score 0.99, RMSD 0.59 Å
- 7UY2 chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.65 Å
- 5LJN chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.67 Å
- 5LJN chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.67 Å
- 8Z36 chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.72 Å
- 4P0A chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.71 Å
- 4P0A chain A against the predicted model Q96EP0: TM-score 0.98, RMSD 0.71 Å
- 6KC5 chain B against the predicted model Q96EP0: TM-score 0.98, RMSD 0.74 Å
- 6KC5 chain B against the predicted model Q96EP0: TM-score 0.98, RMSD 0.74 Å
- 8Z36 chain C against the predicted model Q96EP0: TM-score 0.98, RMSD 0.75 Å
Elsewhere
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